NAME

alignment-find - Find the last (or first) FASTA alignment in a file.

SYNOPSIS

alignment-find [OPTIONS] < in-file

DESCRIPTION

Find the last (or first) FASTA alignment in a file.

ALLOWED OPTIONS:

-h, --help

produce help message

--alphabet arg

Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.

--first

get the first alignment in the file

--last

get the last alignment in the file (default)

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.