NAME

path-graph -- Compute a consensus alignment for the alignments given.

SYNOPSIS

path-graph [OPTIONS] < alignments-file

DESCRIPTION

Compute a consensus alignment for the alignments given.

ALLOWED OPTIONS:

-h, --help
produce help message
--alphabet arg
Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.
--taxa arg
Colon-separate pair of taxon names
--skip arg (=0)
number of tree samples to skip
--max-alignments arg (=1000)
maximum number of alignments to analyze

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.