NAME

trees-bootstrap -- Compare support for partitions between different files.

SYNOPSIS

trees-bootstrap file1 [file2 ... ] --predicates predicate file [OPTIONS]

DESCRIPTION

Compare support for partitions between different files.

INPUT OPTIONS:

-h, --help
Produce help message.
-s arg (=10%), --skip arg (=10%)
Number of trees to skip.
-u arg, --until arg
Read until this number of trees.
-m arg, --max arg
Thin tree samples down to this number of trees.
-x arg, --subsample arg
Factor by which to sub-sample.
--predicates arg
Predicates to examine.
--min-support arg (=0.1)
Minimum value of predicates to consider interesting..
-v, --verbose
Output more log messages on stderr.

BLOCK BOOTSTRAP OPTIONS:

--bootstrap
Do block bootstrapping to get a CI on the posterior probabilities.
--samples arg (=10000)
Number of bootstrap samples.
--pseudocount arg (=1)
Extra 0/1 to add to bootstrap samples.
--blocksize arg
Block size to use in block boostrap.
--seed arg
Random seed.

REPORTING OPTIONS:

--separation arg (=0)
Only report trees/partitions if they differ by this many LODs
--confidence arg (=0.95)
Width of confidence intervals
--LOD-table arg
Write the partitions LOD10's to a file.

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.