Release Notes

Version 3 (unreleased, in development):
  • [3.0] - May-??-2017
  • Speed & Memory
    • [65%-300% faster] So far.
    • 0-3 times reduction in memory usage.
  • Features
    • 06/21/16 New treelength prior: don't prefer huge treelengths for trees with lots of leaves.
    • 10/01/16 Allow analyzing 1- and 2-sequence alignments.
    • 11/30/16 Allow specifying model and priors:
      • HKY[kappa=2].
      • HKY[kappa~logNormal[log[2],0.25]].
    • 02/13/17 Likelihood rescaling (compute likelihoods for large trees).
    • 04/17/17 Print out the model and priors (including defaults)
    • 04/17/17 Allow specifying priors on scale factors for branch lengths in each partition:
      • --scale=~Gamma[0.5,2]
      • --scale=1
  • Misc
    • Update BOOST, Eigen.
    • 04/14/17 Add unit tests.
  • Changes
    • 04/17/17 - Simplify command-line options (some old options have been removed).

comments and suggestions: benjamin . redelings * gmail + com