Release Notes

Version 3 (unreleased, in development):
  • [3.0] - Mar-??-2017
  • Speed
    • [65%-300% faster] So far.
  • Models
    • 04/14/16 Allow specifying constant model parameters with e.g. HKY[kappa=2]
    • 11/30/16 Allow specifying priors on model parameters e.g. HKY[kappa~logNormal[log[2],0.25]].
  • Misc
    • Update BOOST, Eigen.
  • Changes
    • 04/27/16 - Clean up command-line options somewhat.
  • Fixes
    • 04/14/16 Fix gwF to actually use 'f' parameter.
    • 06/21/16 New treelength prior: don't prefer huge treelengths for trees with lots of leaves.
    • 10/01/16 Allow analyzing 1- and 2-sequence alignments.

comments and suggestions: benjamin . redelings * gmail + com