>Methanospirillum hungatei 1 UCAA----UAGCGGCCACAGCAGGUGU-GUCACACCCGUUCCCAUUCCGAAC-ACGGAAGUUAAGACACCUCAC----------------GUGGA-UGACGGUACUGAGGU-------------------AC-GCGAGUCCUCGGGAAAUCAUCCU--------------------------------------CGCUGCUAU------U-GUU >Haloarcula UU------AGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAAC-ACGGAAGAUAAGCCCACCAGC----------------GUUCC-GGGGAGUACUGGAGU-------------------GC-GCGAGCCUCUGGGAAACGCGGUU--------------------------------------CGCCGC---C-------ACC >Halobacterium UUA-----AGGCGGCCAUAGCGGUGGG-GUUACUCCCGUACCCAUCCCGAAC-ACGGAAGAUAAGCCCGCCUGC----------------GUUCC-GGUCAGUACUGGAGU-------------------GC---GAGCCUCUGGGAAAUCCGGUU--------------------------------------CGCCGC---CU------ACU >Haloferax UUA-----AGGCGGCCAGAGCGGUGAG-GUUCCACCCGUACCCAUCCCGAAC-ACGGAAGUUAAGCUCACCUGC----------------GUUCU-GGUCAGUACUGGAGU-------------------GA-GCGAUCCUCUGGGAAAUCCAGUU--------------------------------------CGCCGC---C-------CCU >Halorubrum distributum 1 GU------AGGCGGCCAAAGCGGCAGG-GAAAGACCCGUACCCAUUCCGAAC-ACGGAAGUGAAGCCUGCCAGC----------------GUACC-AGCUAGUACUGGAGU-------------------GG-GAGACCCUCUGGGAGCGCUGGUU--------------------------------------CGCCGC---CU-----ACUC >Natrinema sp. 1 UUA-----CGGCGGCCACAGCGGCGAG-GUACCUCCCGUACCCAUCCCGAAC-ACGGAAGAUAAGCUCGCCUGC----------------GUUUC-GGUCAGUACUGGAGU-------------------GG-GCGACCCUCUGGGAACCCCGAUU--------------------------------------CGCCGCCACCA------CUC >Methanolobus tindarius 1 GG------UGGCGGCCAUAGCGGCGGG-GCAAUUCCUGUACCCAUCCCGAAC-ACAGAAGAUAAGCCCGCCUGC----------------GUUCU-AUACUGUACUAAAGU-------------------AU-GAGAGUCUUUGGGAAAUAUGGAA--------------------------------------CGCUGCCAC------C-AAC >Methanosarcina GGAGU---UUGGCGCCAUAGCGGCAGU-GUAACUCCUGUACCCAUCCCGAAC-ACAGUAGAUAAGCCUGCCCGC----------------GUUCC-UUACUGUACUGAAGU-------------------GU-GCGAGCCUUCGGGAACUCUGGAU--------------------------------------CGCUGCCAU--AC-UC-ACC >Methanosarcina.v GAUC----UGGCAGCCAUAGCGGCAGG-UGUAAUCCUGUACCCAUCCCGAAC-ACAGUAGAUAAGCCUGCCCGC----------------GUUCCUUGCCUGUACUGAAGU-------------------GU-GCGAGCU-UCGGGAACUCUGGAU--------------------------------------CG-UGCCAUA----UC-AGU >Nanoarchaeum equitans 1 GUUUCGUGGGAGGGCCAUAGCGGCCCGGGAACCACCCGUACCCAUCUCGAAC-ACGGAAGUUAAGCCGGGCCGC----------------GUCCC-GAGUGGUACUGCCCC----------------------GCGAAGGGGUGGGAAGCUCGGGA--------------------------------------U---------------GCCC >Thermoplasma GG------CAACGGUCAUAGCAGCAGG-GAAACACCAGAUCCCAUUCCGAAC-UCGACGGUUAAGCCUGCU-GC----------------GUAUU-GCGUUGUACUGUAUG-------------------CC-GCGAGGGUACGGGAAGCGCAAUA--------------------------------------UGCUGUUAC------C-ACU >Pyrococcus GGUA----CGGCGGUCAUAGCGGGGGG-GCCACACCCGGUCUCAUUUCGAAC-CCGGAAGUUAAGCCCCCCAGC----------------GAUCC-CGGCUGUACUGCCCU-------------------CC-GAGAGGGGGCGGGAACCGGGG-A--------------------------------------CGCCGC---CG-----GCCA >Thermococcus GGUA----CGGCGGUCAUAGCGGCGGG-GUCACACCCGGUCUCGUUUCGACC-CCGGAAGUUAAGCCCGCCAGC----------------GAUCC-CGGUUGUACUGCCCU-------------------CC-GGGAGGGGGCGGGAACCGGGG-A--------------------------------------CGCCGCCGG------C-CAC >Methanococcus UGACA---UAACGGUCAAAGCGGAGGU-GUAACAUCCGAUCCCAUCCCGAUC-UCGGAAAUUAAGCCCUCCAGC----------------GAUUC-UUUAAGUACUGCU---------------------------AUCUAGUGGGAACAAAGUGA--------------------------------------CGCCGUUAG------U-CAC >Methanothermococcus UGAUA---UAACGGUCAUAGCGGAGGA-GCCACAUCCGAUCCCGUCCCGAUC-UCGGAAAUUAAGCCCUCCAGC----------------GAUAC-CCUAAGUACUGCCAUUUG---------------------------GUGGGAACAGGGUGA--------------------------------------CGCUGUUGA------U-CAC >Methanothermobacter GU------UGGCGGUCAUGGCGUGGGG-UUUAUACCUGAUCUCGUUUCGAUC-UCAGUAGUUAAGUCCUGCUGC----------------GUUGUGGGUGUGUACUGCGGU-------------------UU-UU--UGCUGUGGGAAGCCCACUU--------------------------------------CACUGCCAG------A-CAA >Methanothermus GGUA----CGGCGACCAUAGCGGGGGG-GCCACACCUGAACCCGUUCCGAUC-UCAGAAGUUAAGCCCCCCUGC----------------GUUGG-AGGUGGUACUGCAAC-------------------GU-UAG--U-UGCGGGAAGCCUCCAA--------------------------------------CGUCGCCGG------C-CCA >Campylobacter jejuni 3 AUGU----CCGUGAUUAUACAGAUGUG-GAAACGCCUUGCUCCAUCCCGAAC-CAAGAAGCUAAGCACAUCGUG----------------GG----UGAUGAUACUACGCCU-------------------------------------------------UACUGGCAGGGGGAAAGU-----------AGCUCAUUGC---GG-----ACUU >Chlamydia trachomatis 1 CU------UGGUGAUAAUAGAGAGAGG-GAAACACCUGACACCAUUCCGAAC-UCAGAAGUUAAGCCUCUGAUC----------------GC----UGAUGGUACUAUAC-----------------------ACAAGAGUAUGGGAGAGUAGG-U--------------------------------------CGUCGCCAA------G-CAU >Streptomyces ambofaciens 1 GUUU----CGGUGGUCAUAGCGUUAGG-GAAACGCCCGGUUACAUUCCGAAC-CCGGAAGCUAAGCCUUACAGC----------------GC----CGAUGGUACUGCAG--------------------GG-GGGACCCUGUGGGAGAGUAGG-A--------------------------------------CGCCGC---CG-----AACA >Agrobacterium tumefaciens 6 CGACC---UGGUGGUCAUCGCGGGGCG-GCUGCACCCGUUCCCUUUCCGAAC-ACGGCCGUGAAACGCCCCAGC----------------GC----CAAUGGUACUUCGUC-------------------UC-AAGA---CGCGGGAGAGUAGG-U--------------------------------------CGCUGCCAG------G-UCU >Escherichia UGCC----UGGCGGCCGUAGCGCGGUG-GUCCCACCUGACCCCAUGCCGAAC-UCAGAAGUGAAACGCCGUAGC----------------GC----CGAUGGUAGUGUGG----------------------------------------------GGUCUCCC---------------CAUGCGAGAGUAGGGAACUGCCAG------G-CAU >Thermus AAUCCC--CCGUGCCCAUAGCGGCGUG-GAACCACCCGUUCCCAUUCCGAAC-ACGGAAGUGAAACGCGCCAGC----------------GC----CGAUGGUACUGGG-C-------------------GG-GCGACCGCCUGGGAGAGUAGG-U--------------------------------------CGGUGCGGG------G-GAU >Aquifex aeolicus 1 CCCC----UGGUGGCCAUAGCGGGGGG-GAAACACCCGGUCCCAUUCCGAAC-CCGGCAGUUAAGCCCCCCAGC----------------GC----CGAUGAUACUGUGCC-------------------GG--CAGCGGCACGGGAAAGUAGG-U--------------------------------------CGCUGC---CA-----GGGG >Thermotoga maritima 1 AUCCCC--GGGUGCCGAUACUGGGGCGGGAAACACCCGGUUCCAUUCCGAAC-CCGGCCGUUAAGCCGCCCUGG----------------GCC----GAUGGUAGUAUGGG-------------------GGC--AGCCCCAUGCGAGAGUAGG-U--------------------------------------AGCGCCCGG------G-GAU >Bacillus anthracis 1 UU------UGGUGAUGAUGGCAGAGAG-GUCACACCCGUUCCCAUACCGAAC-ACGGAAGUUAAGCUCUCUAGC----------------GC----CGAUGGUAGUUGGGA-------------------CC-UUGUCCC--UGUGAGAGUAGG-A--------------------------------------CGUCGC---CA------AGC >Geobacillus stearothermophilus 1 CC------UAGUGGUGAUAGCGGAGGG-GAAACACCCGUUCCCAUCCCGAAC-ACGGAAGUUAAGCCCUCCAGC----------------GC----CGAUGGUAGUUGGG--------------------GC-CAGCGCCCCUGCAAGAGUAGG-U--------------------------------------CGCUGC---UA------GGC >Flavobacterium hydatis 1 UA------AGGUGGUUAUUGCGGCGGG-GCUCGACCUCUUCCCAUCCCGAAC-AGAGUAGUUAAGCCCGCCUGC----------------GC----AGAUGGUACUGCAGUU---------------------------AUGUGGGAGAGUAUG-U--------------------------------------CGUCGC---CU------UUC >Spirochaeta aurantia 1 CC------UGGUGAUCAUAGCGAAGAG-GUCCCACCCGUUCCCAUCCCGAAC-ACGGAAGUUAAGCUCUUCAGC----------------GC----CGAUGGUACUGCUAUUG-----------------------------CGGGAGAGUAGG-U--------------------------------------CGUCGC---CA-----GGCU >Archeoglobus AUGC----CGACGGUCAUAGGACGGGG-GAAACACCCGGACUCAUUCCGAAC-CCGGAAGUUAAGCCCCGUUCC----------------GUCCC-GCACAGUACUGUGUU-------------------CC-GAGAGGGCACGGGAACUGCGG-G--------------------------------------AACCGU---CG-----GCUU >Pyrobaculum aerophilum 1 GCCCC-UAACCCGGCCAUAGGCGCCGGUGAUACGCCCGGUCUCAU-CAGAAC-CCGGAAGCUAAGGCCGGCGCC----------------GCGCU-CGGGAGUACUGGGCU-------------------CC-GCGAGGGCCCGGGAAACCGGC-G--------------------------------------UGCUGGGAG--GGG-G-CUU >Desulfurococcus mobilis 1 UGCCCG--ACCCGGCCAUAGUGGCCGG-GCAACACCCGGUCUCGUUUCGAAC-CCGGAAGUUAAGCCGGCCA-CGUCAGAACGGCCGUGA-----------------------GGUCCGAGAGGCCUCGC--------------------------AGCCGUUC---------------UGAGCUGGGAU---------------CGGGC-ACC >Sulfolobus GCCC----ACCCGGUCACAGUGAGCGG-GCAACACCCGGACUCAUUUCGAAC-CCGGAAGUUAAGCCGCUCA-CGUUAGUGGGGCCGUGG-----------------------AUACCGUGAGGAUCCGC--------------------------AGCCCCAC---------------UAAGCUGGGAU---------------GGG-U-UUU >Gelidium amansii 1 AC------AUUCGGCCAUACUAAGUCGACAUGUACCCGAUCCCAUCCCGAAC-UCGGAAGUCAAGUCGCUUCAG----------------G-CCG-GGUUAGUACUGAGGU-------------------GA-GGGAUCACUCGGGAAUCCCCG-G--------------------------------------UGCCG---AA-------UGU >Cryptosporidium parvum 1 GC------AAUCGGCCAUACUACAUCG-AAUAUACCGGAUCCCAU-CAGAAC-UCCGAAGUCAAGCGGUGUAAG----------------G-UUC-GGUUAGUACUAGGGU-------------------GG-GGGACCACCUGGGAAGACCAGAA--------------------------------------UGUCGAUCG------C-CUC >Nosema bombycis 1 GA-------UACGGUUAUAUUUACUGA-AAACCACCGGAACCCAU-CAGAAC-UCCGAAGUUAAACCAGUAUGA----------------G-CUU-AAUUAGUACUAAGAA-------------------GG-GAGACCACUUGGGAACGUUGG-G--------------------------------------UGGUA--------------- >Zea mays 1 GG------AUGCGAUCAUACCAGCACU-AAAGCACCGGAUCCCAU-CAGAAC-UCCGAAGUUAAGCGUGCUUGG----------------G-CGA-GAGUAGUACUAGGAU-------------------GG-GUGACCUCCUGGGAAGUCCUC-G--------------------------------------UGUUGC---AU------UCC >Euglena GA------GUACGGCCAUACUACCGGG-AAUACACCUGAACCCGU-UCGAUU-UCAGAAGUUAAGCCGGGUUAG----------------G-CCC-AGUUAGUACUGA-GU-------------------GG-GCGACCACUUGGGAACACUGG-G--------------------------------------UGCUGU---AC-----GCUU >Caenorhabditis elegans 1 GC------UUACGACCAUAUCACGUUG-AAUGCACGCCAUCCCGU-CCGAUC-UGGCAAGUUAAGCAACGUUGA----------------G-UCC-AGUUAGUACUUGGAU-------------------CG-GAGACGGCCUGGGAAUCCUGG-A--------------------------------------UGUUGU---AA------GCU >Drosophila melanogaster 1 GC------CAACGACCAUACCACGCUG-AAUACAUCGGUUCUCGU-CCGAUC-ACCGAAAUUAAGCAGCGUCGG----------------G-CGC-GGUUAGUACUUAGAU-------------------GG-GGGACCGCUUGGGAACACCGC-G--------------------------------------UGUUGU---UG-----GCCU >Xenopus laevis 1 GC------CUACGGCCAUACCACCCUG-AAAGUGCCCGAUAUCGU-CUGAUC-UCGGAAGCCAAGCAGGGUCGG----------------G-CCU-GGUUAGUACUUGGAU-------------------GG-GAGACCGCCUGGGAAUACCAG-G--------------------------------------UGUCGU---AG-----GCUU >Cryptobranchus alleganiensis 1 GC------CUACGGCCAUACCACCCUG-AAUGCGCCCGAUCUCGU-CUGAAC-UCAGAAGCUAAGCAGGCUUGG----------------G-CCU-GGUUAGUACUUGGAU-------------------GG-GAGACUGCCUGGGAAUACCAG-G--------------------------------------UGCUGUAGG------C-UUU >Homo GU------CUACGGCCAUACCACCCUG-AACGCGCCCGAUCUCGU-CUGAUC-UCGGAAGCUAAGCAGGGUCGG----------------G-CCU-GGUUAGUACUUGGAU-------------------GG-GAGACCGCCUGGGAAUACCGG-G--------------------------------------UGCUGUAGG------C-UUU >Dictyostelium discoideum 1 GU------AUACGGCCAUACUAGGUUG-GAAACACAUCAUCCCGU-UCGAUC-UGAUAAGUAAAUCGACCUCAG----------------G-CCU-UCCAAGUACUCUGGU-------------------UG-GAGACAACAGGGGAACAUAGG-G--------------------------------------UGCUGU---AU------ACU >Physarum polycephalum 1 GG------AUGCGGCCAUACUAAGGAG-AAAGCACCUCAUCCCGU-CCGAUC-UGAGAAGUUAAGCUCCUUCAG----------------G-CGU-GGUUAGUACUGGGGU-------------------GG-GGGACCACCUGGGAAUCCCAC-G--------------------------------------UGCUGC---AU-----UCUU >Amoebidium parasiticum 1 GG------UUACGGCCAUACCUAGCAG-AAAGCACCCCAUCUCGU-CCGAUC-UGGGAAGUUAAACUGCUAUGG----------------G-CGU-GGUUAGUACUGCGGU-------------------GG-GGGACCACGCGGGAAUACCAC-G--------------------------------------UGCUGU---AA------UCU >Candida albicans 1 GG------UUGCGGCCAUAUCUAGCAG-AAAGCACCGUUCCCCGU-UCGAUCAACCGUAGUUAAGCUGCUAAGA----------------GCAAU-ACCGAGUAGUGUAGU-------------------GG-GAGACCAUACGCGAAACUAUU-G--------------------------------------UGCUGC---AA------UCU >Saccharomyces GG------UUGCGGCCAUAUCUACCAG-AAAGCACCGUUCUCCGU-CCGAUCAACUGUAGUUAAGCUGGUAAGA----------------GCCUG-ACCGAGUAGUGUAGU-------------------GG-GUGACCAUACGCGAAACUCAG-G--------------------------------------UGCUGC---AA------UCU