NAME

alignment-info - Show useful statistics about the alignment.

SYNOPSIS

alignment-info alignment-file [tree-file] [OPTIONS]

DESCRIPTION

Show useful statistics about the alignment.

ALLOWED OPTIONS:

-h, --help

produce help message

--align arg

file with sequences and initial alignment

--tree arg

file with initial tree

--alphabet arg

specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons

-e, --erase-empty-columns

Remove columns with no characters (all gaps).

-N, --show-names

Print the sequence-names and exit

-L, --show-lengths

Print the sequence-lengths and exit

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.