NAME

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

tree-mean-lengths tree-file < in-file

DESCRIPTION

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

-h, --help

produce help message

--tree arg

tree to re-root

-s arg (=0), --skip arg (=0)

number of tree samples to skip

-u arg, --until arg

Read until this number of trees.

--prune arg

Comma-separated taxa to remove

--simple

Ignore all branches not in the query tree

-x arg (=1), --subsample arg (=1)

factor by which to sub-sample

--var

report standard deviation of branch lengths instead of mean

--no-node-lengths

ignore branches not in the specified topology

--safe

Don't die if no trees match the topology

--show-node-lengths

Output special format

-v, --verbose

Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php.

Please send bug reports to bali-phy-users@googlegroups.com.