BAli---Phy

Example analyses with results

1. 5S rRNA - 25 sequences
   % bali-phy 25.fasta --smodel "gtr +> Rates.gamma(4) +> inv +> Covarion.hb02"
2. 5S rRNA - 48 sequences
   % bali-phy 48-fsa.fasta --smodel "gtr +> Rates.gamma(4) +> inv"
3. Globins - 28 sequences
   % bali-phy few-globins.fasta --smodel "lg08 +> Rates.free(n=5)"
4. ITS1 + 5.8S + ITS2 - 68 sequences
   % bali-phy -c ITS.txt --name ITS-3.1.5