WAG_freq — The WAG amino-acid frequencies
Usage
WAG_freq(a: a)
→ Map<String,Double>
Arguments
-
a: -
The alphabet
-
Default: The alphabet in the current context
Original default expressions
-
a -
get_state(alphabet)
Description
A fixed frequency vector from the dataset in the WAG paper.
Examples
WAG +> F(wag_frequencies)Citation
Whelan, Simon; Goldman, Nick (2001). A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach. Molecular Biology and Evolution 18(5): 691--699. DOI: 10.1093/oxfordjournals.molbev.a003851